Thursday, January 7, 2010

Feast of the 3 Kings



Yesterday was the Feast of the 3 Kings. And after mass, we had everyone over for dinner. And to celebrate the 3 Kings. Even Papi Rene came. It was really neat. And we had Rosca de Reyes. It's a bread that they bake a baby Jesus into.

Whoever gets the baby Jesus, they have to have the party for the Candelaria. That's on February 2nd. It's also the last day of Christmas at church. My tio Jose got it! It was really funny!

But we had a fun night. It's neat to hear all the stories that my Abuelita, Dad, and Papi Rene tell. I learned a lot! And mi Tia Amelia was tell us stories about when she worked in the bakery in Mexico! I'm glad we celebrate these things. :) C

Wednesday, January 6, 2010

ESTOU DE VOLTA!!!!!!!!

VOLTEI.


http://1.bp.blogspot.com/_vzrlnu76oJw/Syv73WuWx7I/AAAAAAAACoU/Dj0xSM2jerg/s320/SANDRNAT2.gif

CHEGUEI DE MADRUGADA.
VIM DIZER QUE ESTOU COM MUITA SAUDADES.
E LOGO VOU VISITAR A TODOS.
HOJE FOI DIA DE FAXINA NA CASA. CL
ARO QUE TIVE AJUDA. AINDA NÃO POSSO PISAR.
ESPERO QUE FINAL DE MÊS O MÉDICO ME LIBERA.
A FAXINA FOI FEITA PELA MINHA CUNHADA, ALÉM DE VIM ME TRAZER DE VOLTA PARA JARAGUÁ D
O SUL, TEVE QUE CONTRIBUIR COM ESTA AJUDA.
MAS TUDO FAZ PARTE.
MAS, O ANO COMEÇOU BEM. ESTOU CHEIAS DE ESPERANÇA.
TENHO CERTEZA QUE ESTE ANO, SERÁ CHEIO DE REALIZAÇÕES.
TEM TUDO PARA REALIZAR O MEU GRANDE SONHO, PUBLICAR MEUS DOIS LIVROS POR AQUI. NESTA LINDA CIDADE, QUE RESIDO A 20 ANOS.
ESTOU FELIZ, POR ISSO.
JÁ FIZ OS PRIMEIROS CONTATOS COM A EDITORA DAQUI.
AGORA É SÓ TRABALHAR PARA ESSE SONHO ACONTECER...

AGRADEÇO O SEU IMENSO CARINHO.
DURANTE A SEMANA VOU RETRIBUIR CADA RECADINHO AQUI DEIXADO.
MUITO OBRIGADA MEUS AMORES.
COM CARINHO SANDRA OU SIMPLESMENTE
, ENDY, COMO ME CHAMAM CARINHOSAMENTE.


UM GRANDE BEIJOS A TODOS!!!!

VENHA COMIGO...


Poetas-Um Vôo Livre

Sinal de Liberdade-uma expressão de sentimento

Blog Coletivo-Uma Interação de Amigos

Meus Mimos!


Chronic Fatigue Syndrome in "not caused by single virus" shock!

Late last year, Science published a bombshell - Lombardi et al's Detection of an infectious retrovirus, XMRV, in blood cells of patients with chronic fatigue syndrome. This paper reported the presence of a recently-discovered virus in 67% of the blood samples from 101 people with chronic fatigue syndrome (CFS).

The question of whether people with CFS are suffering from an organic illness, or whether their condition is partially or entirely psychological in nature, is the Israel vs. Palestine of modern medicine - as a brief look at the Wikipedia talk pages will show. So when Lombardi et al linked CFS to xenotropic murine leukaemia virus-related virus (XMRV), they were hailed as heroes by some, less so by others. For some balanced coverage of this paper, see virology blog. Everyone agreed though that Lombardi et al was, as the saying goes, "important if true"...

But it wasn't, at least not everywhere, according to a paper out today in PLoS ONE: Erlwein et al's Failure to Detect the Novel Retrovirus XMRV in Chronic Fatigue Syndrome. The findings are all there in the title - unlike Lombardi et al, these researchers didn't find XMRV in the blood of any of their blood samples from 186 CFS patients.

Still, before people start proclaiming that the original finding has been "debunked", or decrying these results as flawed, some things to bear in mind...

This was a different country. Erlwein et al used patients attending the CFS clinic at King’s College Hospital, London, England. The patients in the original study were drawn from various parts of the USA. So the new results don't mean that the original findings were wrong, merely that they don't apply everywhere. Notably, XMRV has previously been detected in prostrate cancer cells from American patients, but not European ones, so geographic differences seem to be at work. So maybe XMRV does cause CFS, it's just that the virus doesn't exist in Europe, for whatever reason - but bear in mind that even the original study never showed causation, only a correlation. There are many viruses that infect people in certain parts of the world and don't cause illness.

On the other hand, it was a similar group of patients in terms of symptoms: Diagnosing CFS can be difficult, as there are no biological tests to confirm the condition, but Erlwein et al say that
Both studies use the widely accepted 1994 clinical case definition of CFS. Lombardi et al. reported that their cases ‘‘presented with severe disability’’ and we provide quantifiable evidence confirming high levels of disability in our subjects. Our subjects were also typical of those seen in secondary and tertiary care in other centres.
But the first study selected patients with "immunological abnormalities", although we're given few details...
These are patients that have been seen in private medical practices, and their diagnosis of CFS is based upon prolonged disabling fatigue and the presence of cognitive deficits and reproducible immunological abnormalities. These included but were not limited to perturbations of the 2-5A synthetase/RNase L antiviral pathway, low natural killer cell cytotoxicity (as measured by standard diagnostic assays), and elevated cytokines particularly interleukin-6 and interleukin-8.
The biological methods were similar: Both studies used a standard technique called nested PCR. (Lombardi et al also used various other methods, but their headline finding of XMRV in 67% of CFS patients vs just 4% of health people came from nested PCR.) PCR is a way of greatly increasing the amount of a certain sequence of DNA in a sample. If there's even a little bit to start with, you end up with lots. If there's none, you end up with none. It's easy to tell the difference between lots and none.

But there were some differences. The first study only looked at a certain kind of white blood cells, whereas the new study used DNA from whole blood. Also, the first study targeted a larger span of viral DNA - from 419 to 1154:
For identification of gag, 419F and 1154R were used as forward and reverse primers.
Than the second one, which examined the section between positions 411 and 606. As a result, primer sequences used - which determine the DNA detected - were different. However, the authors of the new study claim that they would definitely have detected XMRV DNA if it had been there, because they used the same methods on control samples with the virus added, and got positive results...
The positive control was a dilution of a plasmid with a full-length XMRV (isolate VP62) insert, generously gifted by Dr R. Silverman.
Silverman was one of the authors of the original paper - so hopefully, both research teams were studying the same virus. But (although I'm no virologist) it seems possible that the new study might have been unable to detect XMRV if the DNA sequence of the virus from British patients was differed at certain key ways - the whole point about nested PCR is that it's extremely specific.

Finally, there are stories behind these papers. The first study, that suggested that XMRV causes CFS, was conducted by the Whittemore Peterson Institute, who firmly believe that CFS is an organic disorder and who are now offering XMRV diagnostic tests to CFS patients. By contrast, the authors of the new study include Simon Wessely, a psychiatrist. Wessely is the most famous (or notorious) advocate of the idea that psychological factors are the key to CFS; he believes that it should be treated with psychotherapy.

I'm sure we'll be hearing a lot more about XMRV in the coming months, so stay tuned.

ResearchBlogging.orgErlwein, O., Kaye, S., McClure, M., Weber, J., Wills, G., Collier, D., Wessely, S., & Cleare, A. (2010). Failure to Detect the Novel Retrovirus XMRV in Chronic Fatigue Syndrome PLoS ONE, 5 (1) DOI: 10.1371/journal.pone.0008519

Lombardi VC, Ruscetti FW, Das Gupta J, Pfost MA, Hagen KS, Peterson DL, Ruscetti SK, Bagni RK, Petrow-Sadowski C, Gold B, Dean M, Silverman RH, & Mikovits JA (2009). Detection of an infectious retrovirus, XMRV, in blood cells of patients with chronic fatigue syndrome. Science (New York, N.Y.), 326 (5952), 585-9 PMID: 19815723

Chronic Fatigue Syndrome in "not caused by single virus" shock!

Late last year, Science published a bombshell - Lombardi et al's Detection of an infectious retrovirus, XMRV, in blood cells of patients with chronic fatigue syndrome. This paper reported the presence of a recently-discovered virus in 67% of the blood samples from 101 people with chronic fatigue syndrome (CFS).

The question of whether people with CFS are suffering from an organic illness, or whether their condition is partially or entirely psychological in nature, is the Israel vs. Palestine of modern medicine - as a brief look at the Wikipedia talk pages will show. So when Lombardi et al linked CFS to xenotropic murine leukaemia virus-related virus (XMRV), they were hailed as heroes by some, less so by others. For some balanced coverage of this paper, see virology blog. Everyone agreed though that Lombardi et al was, as the saying goes, "important if true"...

But it wasn't, at least not everywhere, according to a paper out today in PLoS ONE: Erlwein et al's Failure to Detect the Novel Retrovirus XMRV in Chronic Fatigue Syndrome. The findings are all there in the title - unlike Lombardi et al, these researchers didn't find XMRV in the blood of any of their blood samples from 186 CFS patients.

Still, before people start proclaiming that the original finding has been "debunked", or decrying these results as flawed, some things to bear in mind...

This was a different country. Erlwein et al used patients attending the CFS clinic at King’s College Hospital, London, England. The patients in the original study were drawn from various parts of the USA. So the new results don't mean that the original findings were wrong, merely that they don't apply everywhere. Notably, XMRV has previously been detected in prostrate cancer cells from American patients, but not European ones, so geographic differences seem to be at work. So maybe XMRV does cause CFS, it's just that the virus doesn't exist in Europe, for whatever reason - but bear in mind that even the original study never showed causation, only a correlation. There are many viruses that infect people in certain parts of the world and don't cause illness.

On the other hand, it was a similar group of patients in terms of symptoms: Diagnosing CFS can be difficult, as there are no biological tests to confirm the condition, but Erlwein et al say that
Both studies use the widely accepted 1994 clinical case definition of CFS. Lombardi et al. reported that their cases ‘‘presented with severe disability’’ and we provide quantifiable evidence confirming high levels of disability in our subjects. Our subjects were also typical of those seen in secondary and tertiary care in other centres.
But the first study selected patients with "immunological abnormalities", although we're given few details...
These are patients that have been seen in private medical practices, and their diagnosis of CFS is based upon prolonged disabling fatigue and the presence of cognitive deficits and reproducible immunological abnormalities. These included but were not limited to perturbations of the 2-5A synthetase/RNase L antiviral pathway, low natural killer cell cytotoxicity (as measured by standard diagnostic assays), and elevated cytokines particularly interleukin-6 and interleukin-8.
The biological methods were similar: Both studies used a standard technique called nested PCR. (Lombardi et al also used various other methods, but their headline finding of XMRV in 67% of CFS patients vs just 4% of health people came from nested PCR.) PCR is a way of greatly increasing the amount of a certain sequence of DNA in a sample. If there's even a little bit to start with, you end up with lots. If there's none, you end up with none. It's easy to tell the difference between lots and none.

But there were some differences. The first study only looked at a certain kind of white blood cells, whereas the new study used DNA from whole blood. Also, the first study targeted a larger span of viral DNA - from 419 to 1154:
For identification of gag, 419F and 1154R were used as forward and reverse primers.
Than the second one, which examined the section between positions 411 and 606. As a result, primer sequences used - which determine the DNA detected - were different. However, the authors of the new study claim that they would definitely have detected XMRV DNA if it had been there, because they used the same methods on control samples with the virus added, and got positive results...
The positive control was a dilution of a plasmid with a full-length XMRV (isolate VP62) insert, generously gifted by Dr R. Silverman.
Silverman was one of the authors of the original paper - so hopefully, both research teams were studying the same virus. But (although I'm no virologist) it seems possible that the new study might have been unable to detect XMRV if the DNA sequence of the virus from British patients was differed at certain key ways - the whole point about nested PCR is that it's extremely specific.

Finally, there are stories behind these papers. The first study, that suggested that XMRV causes CFS, was conducted by the Whittemore Peterson Institute, who firmly believe that CFS is an organic disorder and who are now offering XMRV diagnostic tests to CFS patients. By contrast, the authors of the new study include Simon Wessely, a psychiatrist. Wessely is the most famous (or notorious) advocate of the idea that psychological factors are the key to CFS; he believes that it should be treated with psychotherapy.

I'm sure we'll be hearing a lot more about XMRV in the coming months, so stay tuned.

ResearchBlogging.orgErlwein, O., Kaye, S., McClure, M., Weber, J., Wills, G., Collier, D., Wessely, S., & Cleare, A. (2010). Failure to Detect the Novel Retrovirus XMRV in Chronic Fatigue Syndrome PLoS ONE, 5 (1) DOI: 10.1371/journal.pone.0008519

Lombardi VC, Ruscetti FW, Das Gupta J, Pfost MA, Hagen KS, Peterson DL, Ruscetti SK, Bagni RK, Petrow-Sadowski C, Gold B, Dean M, Silverman RH, & Mikovits JA (2009). Detection of an infectious retrovirus, XMRV, in blood cells of patients with chronic fatigue syndrome. Science (New York, N.Y.), 326 (5952), 585-9 PMID: 19815723

Tuesday, January 5, 2010

Back to School

Tomorrow I go back to school. I'm really excited! I've missed my friends. We haven't seen each other at all during our break. But I've also had a lot of fun on winter break.

I did read my book over break though. I'm happy. It will make this week a lot easier for me. Because I also start my dance classes again tomorrow. They've been on break too! I have both my backpack and my dance bag packed. I'm ready for tomorrow.

Dad has to go back to work too. But he will still take me to school tomorrow. My Nono is going to be picking me up. He is very cool. I want him to go with me to my dance class. Maybe he will. I hope so!

That's it for tonight. Dad is making us all some popcorn. And we're watching some TV. In a little while, I have to go to sleep. I hope I can sleep! :) C

The Neuroscience of MySpace

How does popularity affect how we judge music?

We tend to say we like what other people like. No-one wants to stand out and risk ridicule by saying they don't enjoy universally loved bands, like The Beatles... unless they're trying to fit into a subculture where everyone hates The Beatles.

But do people just pretend to like what others like, or can perceived popularity actually change musical preferences? Do The Beatles actually sound better because we know everyone loves them? An amusing Neuroimage study from Berns et al aimed to answer this question with the help of 27 American teens, an fMRI scanner, and MySpace.

The teens were played 15 second clips of music, and had to rate each one a 5 star scale of quality. Before the experiment they listed their preferred musical genres, and they were only given music from genres they liked. To make sure no-one had heard the songs before, the researchers went on MySpace and found unsigned artists...
A total of 20 songs were downloaded in each of the following genres: Rock, Country, Alternative/Emo/Indie, Hip-Hop/Rap, Jazz/Blues, and Metal (identified by the MySpace category).
The twist was that each song was played twice: the first time with no information about its popularity, and then again, either with or without a 5 star popularity score shown on the screen. Cleverly, this was based on the number of MySpace downloads. This meant that the subjects had a chance to change their rating based on what they'd just learned about the song's popularity.

What happened? Compared to doing nothing, hearing music activated large chunks of the brain, which is not very surprising. In some areas, activity correlated with how highly the listener rated the song:
The regions showing activity correlated with likability were largely distinct from the auditory network and were restricted to bilateral caudate nuclei, and right lateral prefrontal cortices (middle and inferior gyri). Negative correlations with likability were observed in bilateral supramarginal gyri, left insula, and several small frontal regions.
The headline result is that a song's popularity did not correlate with activity in this "liking music network", and nor did activity in these areas correlate with each teen's individual "conformism" score, i.e. how willing they were to change their ratings in response to learning about the song's popularity. Berns et al interpreted this as meaning that, in this experiment, popularity did not affect whether the volunteers really enjoyed the songs or not.

Instead, activity in some other areas was associated with conformism:
we found a positive interaction in bilateral anterior insula, ACC/SMA, and frontal poles. Given the known roles of the anterior insula and ACC in the cortical pain matrix, this suggests that feelings of anxiety accompanied the act of conforming....Interestingly, the negative interaction revealed significant differences in the middle temporal gyrus... the popularity sensitive individuals showed significantly less activation. This suggests that sensitivity to popularity is also linked to less active listening.

*

This paper is a good example of using neuroimaging data to try to test psychological theories, in this case, the theory that social pressure influences musical enjoyment. This is makes it better than many fMRI studies because, as I have warned, without a theory to test it's all too easy to just make up a psychological story to explain any given pattern of neural responses.

But there's still an element of this here: the authors suggest that conformism is motivated by anxiety, not because anyone reported suffering anxiety, but purely because it was associated with activity in the anterior insula etc. This is putting a lot of faith in the idea that anterior insula etc activity means anxiety - it could mean a lot of other things. There's also the question of whether letting people rate the songs for the first time before telling them about the popularity is the best way of measuring social pressures.

The most serious omission in this study, however, is that we're not told about the correlations between music preference and conformism. The world needs to know: are kids who like "Alternative/Emo/Indie" music free-thinkers, or are they really the biggest conformists of all? The paper doesn't tell us. In the absence of empirical evidence, we'll have to rely on South Park...
Stan: But if life is only pain, then...what's the point of living?
Fringe-flicking Goth: Just to make life more miserable for the conformists. (flicks fringe)
Stan: Alright, so how do I join you?
Goth Leader: If you wanna be one of the non-conformists, all you have to do is dress just like us and listen to the same music we do.
- South Park, "Raisins"

ResearchBlogging.orgBerns, G., Capra, C., Moore, S., & Noussair, C. (2010). Neural mechanisms of the influence of popularity on adolescent ratings of music NeuroImage, 49 (3), 2687-2696 DOI: 10.1016/j.neuroimage.2009.10.070

The Neuroscience of MySpace

How does popularity affect how we judge music?

We tend to say we like what other people like. No-one wants to stand out and risk ridicule by saying they don't enjoy universally loved bands, like The Beatles... unless they're trying to fit into a subculture where everyone hates The Beatles.

But do people just pretend to like what others like, or can perceived popularity actually change musical preferences? Do The Beatles actually sound better because we know everyone loves them? An amusing Neuroimage study from Berns et al aimed to answer this question with the help of 27 American teens, an fMRI scanner, and MySpace.

The teens were played 15 second clips of music, and had to rate each one a 5 star scale of quality. Before the experiment they listed their preferred musical genres, and they were only given music from genres they liked. To make sure no-one had heard the songs before, the researchers went on MySpace and found unsigned artists...
A total of 20 songs were downloaded in each of the following genres: Rock, Country, Alternative/Emo/Indie, Hip-Hop/Rap, Jazz/Blues, and Metal (identified by the MySpace category).
The twist was that each song was played twice: the first time with no information about its popularity, and then again, either with or without a 5 star popularity score shown on the screen. Cleverly, this was based on the number of MySpace downloads. This meant that the subjects had a chance to change their rating based on what they'd just learned about the song's popularity.

What happened? Compared to doing nothing, hearing music activated large chunks of the brain, which is not very surprising. In some areas, activity correlated with how highly the listener rated the song:
The regions showing activity correlated with likability were largely distinct from the auditory network and were restricted to bilateral caudate nuclei, and right lateral prefrontal cortices (middle and inferior gyri). Negative correlations with likability were observed in bilateral supramarginal gyri, left insula, and several small frontal regions.
The headline result is that a song's popularity did not correlate with activity in this "liking music network", and nor did activity in these areas correlate with each teen's individual "conformism" score, i.e. how willing they were to change their ratings in response to learning about the song's popularity. Berns et al interpreted this as meaning that, in this experiment, popularity did not affect whether the volunteers really enjoyed the songs or not.

Instead, activity in some other areas was associated with conformism:
we found a positive interaction in bilateral anterior insula, ACC/SMA, and frontal poles. Given the known roles of the anterior insula and ACC in the cortical pain matrix, this suggests that feelings of anxiety accompanied the act of conforming....Interestingly, the negative interaction revealed significant differences in the middle temporal gyrus... the popularity sensitive individuals showed significantly less activation. This suggests that sensitivity to popularity is also linked to less active listening.

*

This paper is a good example of using neuroimaging data to try to test psychological theories, in this case, the theory that social pressure influences musical enjoyment. This is makes it better than many fMRI studies because, as I have warned, without a theory to test it's all too easy to just make up a psychological story to explain any given pattern of neural responses.

But there's still an element of this here: the authors suggest that conformism is motivated by anxiety, not because anyone reported suffering anxiety, but purely because it was associated with activity in the anterior insula etc. This is putting a lot of faith in the idea that anterior insula etc activity means anxiety - it could mean a lot of other things. There's also the question of whether letting people rate the songs for the first time before telling them about the popularity is the best way of measuring social pressures.

The most serious omission in this study, however, is that we're not told about the correlations between music preference and conformism. The world needs to know: are kids who like "Alternative/Emo/Indie" music free-thinkers, or are they really the biggest conformists of all? The paper doesn't tell us. In the absence of empirical evidence, we'll have to rely on South Park...
Stan: But if life is only pain, then...what's the point of living?
Fringe-flicking Goth: Just to make life more miserable for the conformists. (flicks fringe)
Stan: Alright, so how do I join you?
Goth Leader: If you wanna be one of the non-conformists, all you have to do is dress just like us and listen to the same music we do.
- South Park, "Raisins"

ResearchBlogging.orgBerns, G., Capra, C., Moore, S., & Noussair, C. (2010). Neural mechanisms of the influence of popularity on adolescent ratings of music NeuroImage, 49 (3), 2687-2696 DOI: 10.1016/j.neuroimage.2009.10.070